ORF ID ENST00000000442.11:36:81
Gene ID ENSG00000173153
Gene Type protein_coding
Gene Symbol ESRRA
Genomic Location (Chrom: start-end; Strand) chr11:64305558 64305603 ; +
Orf Length (nt) 45
Transcript Length (nt) 2274
Upstream Length (nt) 36
Orf Type uORF
Start Codon ATG
Phylocsf ENSG00000173153
Kozak Sequence and Score 9
Orf Length FDR 0.479
Nucleotide Sequence ATGTCCTTTTGTGTCCTACAAGCAGCCGGCGGCGCCGCCGAGTGA
Peptide Sequence MSFCVLQAAGGAAE
Pfam Domain N
TMHMM.2 Domain Y
Alphafold Predicted Structure Y

Peptide cellular Location Predicted by Deeploc

Nucleus Cytoplasm Mitochondrion Golgi Apparatus Endoplasmic Reticulum Membrane Extracellular Cell Membrane LysosomeVacuole Peroxisome Plastid
0.1313

TMHMM transmembrane helices Prediction

Domain Start End
outside 1 14

Structure Prediction

# Structure Start End
1 AlphaHelix 1 11

Description

  • Upstream Length: the distance between the transcript start site and the ORF start codon.
  • Start Codon: the start codon type.
  • Phylocsf: the averaged PhyloCSF score of the ORF sequence.
  • Kozak Score: the Kozak Score of sequence around the start codon.
  • Orf Length FDR: XXX
  • PepScore: the calculated PepScore.
  • Expression Level: the expression levels of translated ORFs across different samples (a link to show the Bar plot).
  • Peptide Location Prediction: the DeepLoc.1 predicted peptide cellular localization (a link to the prediction).
  • Pfam Domain: whether the peptide contains a Pfam domain, (Y: a link to the prediction; N: unavailable).
  • TMHMM.2 Domain: whether the peptide contains a TMHMM domain, (Y: a link to the prediction; N: unavailable).
  • Structure Prediction: whether a structure predicted by Alphafold, (Y: a link to the prediction; N: unavailable).
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Zhe Ji’s Lab

Feinberg School of Medicine

McCormick School of Engineering