ORF ID ENST00000002829.8:720:726
Gene ID ENSG00000001617
Gene Type protein_coding
Gene Symbol SEMA3F
Genomic Location (Chrom: start-end; Strand) chr3:50174324 50174330 ; +
Orf Length (nt) 6
Transcript Length (nt) 3607
Upstream Length (nt) 720
Orf Type iORF
Start Codon ATG
Phylocsf ENSG00000001617
Kozak Sequence and Score 5
Orf Length FDR 0.984
Nucleotide Sequence ATGTGA
Peptide Sequence M
Pfam Domain N
TMHMM.2 Domain Y
Alphafold Predicted Structure N

Peptide cellular Location Predicted by Deeploc

Nucleus Cytoplasm Mitochondrion Golgi Apparatus Endoplasmic Reticulum Membrane Extracellular Cell Membrane LysosomeVacuole Peroxisome Plastid
0.0552

TMHMM transmembrane helices Prediction

Domain Start End
inside 1 1

Description

  • Upstream Length: the distance between the transcript start site and the ORF start codon.
  • Start Codon: the start codon type.
  • Phylocsf: the averaged PhyloCSF score of the ORF sequence.
  • Kozak Score: the Kozak Score of sequence around the start codon.
  • Orf Length FDR: XXX
  • PepScore: the calculated PepScore.
  • Expression Level: the expression levels of translated ORFs across different samples (a link to show the Bar plot).
  • Peptide Location Prediction: the DeepLoc.1 predicted peptide cellular localization (a link to the prediction).
  • Pfam Domain: whether the peptide contains a Pfam domain, (Y: a link to the prediction; N: unavailable).
  • TMHMM.2 Domain: whether the peptide contains a TMHMM domain, (Y: a link to the prediction; N: unavailable).
  • Structure Prediction: whether a structure predicted by Alphafold, (Y: a link to the prediction; N: unavailable).
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Zhe Ji’s Lab

Feinberg School of Medicine

McCormick School of Engineering