ORF ID ENST00000002596.6:10:151
Gene ID ENSG00000002587
Gene Type protein_coding
Gene Symbol HS3ST1
Genomic Location (Chrom: start-end; Strand) chr4:11428744 11428885 ; -
Orf Length (nt) 141
Transcript Length (nt) 7160
Upstream Length (nt) 10
Orf Type uORF
Start Codon CTG
Phylocsf ENSG00000002587
Kozak Sequence and Score 9
Orf Length FDR 0.095
Nucleotide Sequence CTGGCAGCCAGGAGTCGCCGCCACGACAGCCGGGTCTCAGTGGGTGCCTGCGCCTTCTCCCCGCCCGCCTGCCCCGGGCCATCCAGAAACTTGCTCTACCCGCCGCGGGTGCTCGGCAGTGCTGCCCATGGCCCAGCCTAG
Peptide Sequence LAARSRRHDSRVSVGACAFSPPACPGPSRNLLYPPRVLGSAAHGPA
Pfam Domain N
TMHMM.2 Domain Y
Alphafold Predicted Structure Y

Peptide cellular Location Predicted by Deeploc

Nucleus Cytoplasm Mitochondrion Golgi Apparatus Endoplasmic Reticulum Membrane Extracellular Cell Membrane LysosomeVacuole Peroxisome Plastid
0.0733 0.0471 0.8003 0 0 0.1259 0.0783 0.0003 0.0001 0 0.0005

TMHMM transmembrane helices Prediction

Domain Start End
inside 1 46

Structure Prediction

# Structure Start End
1 GammaInv 2 4
2 TurnIV 25 28
3 310Helix 29 31
4 TurnVIII 31 34
5 TurnIV 37 40
6 GammaInv 41 43

Description

  • Upstream Length: the distance between the transcript start site and the ORF start codon.
  • Start Codon: the start codon type.
  • Phylocsf: the averaged PhyloCSF score of the ORF sequence.
  • Kozak Score: the Kozak Score of sequence around the start codon.
  • Orf Length FDR: XXX
  • PepScore: the calculated PepScore.
  • Expression Level: the expression levels of translated ORFs across different samples (a link to show the Bar plot).
  • Peptide Location Prediction: the DeepLoc.1 predicted peptide cellular localization (a link to the prediction).
  • Pfam Domain: whether the peptide contains a Pfam domain, (Y: a link to the prediction; N: unavailable).
  • TMHMM.2 Domain: whether the peptide contains a TMHMM domain, (Y: a link to the prediction; N: unavailable).
  • Structure Prediction: whether a structure predicted by Alphafold, (Y: a link to the prediction; N: unavailable).
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Zhe Ji’s Lab

Feinberg School of Medicine

McCormick School of Engineering